[Feedback] Site Feedback: Orthologs from multiple species

[Marcela K. Monaco]

Dear Anil,

Have you tried the Gramene Mart utility at
http://ensembl.gramene.org/biomart/martview?

First select the "Plant Genes 44: Oryza sativa Japonica genes (IRGSP-1.0
(IRGSP-1.0))" *Dataset*.  Then upload or copy a list of gene IDs for your
genes of interest ("ID list limit" option under *Filters*). Last, select
"homologs" under *Attributes *and then the species and additional info that
you want for the homologs/paralogs of your rice genes of interest in those
species.

Marcela


On Sun, Feb 15, 2015 at 10:20 PM, feedback at gramene.org <feedback at gramene.org
> wrote:

> URL         :
> http://archive.gramene.org/documentation/release_notes/releasenotes17.html
>
> Subject     : Site Feedback: Orthologs from multiple species
>
> Name        : Anil kumar N.C
>
> Email       : anikng at gmail.com
>
> Organization: KHU
>
> Comments    :
>
> Dear Gramene curator,
>
> I am trying to get the orthologs of a set of rice gene( ~3000) from rice
> related species such as maize, sorghum etc as well as from other dicots. Is
> there any provision available in Gramene?
>
>
>
>
>
> http://www.warelab.org/bugs/view.php?id=5122
>
>
> _______________________________________________
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> http://brie4.cshl.edu/mailman/listinfo/feedback
>
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