[Feedback] [mgdb] Site Feedback: ortholog error

[Carson Andorf]

The links at MaizeGDB have been updated.  e.g. (
http://maizegdb.org/cgi-bin/displaygenemodelrecord.cgi?id=GRMZM2G165390)

Thank you for letting us know.

Best,
Carson



On Fri, Feb 6, 2015 at 5:51 AM, Jackson, David <jacksond at cshl.edu> wrote:

> Hi Marcella, yes, it is the link from MaizeGDB that seems to be the
> problem, thanks
> Dave
>
> Dave Jackson,
> Professor,
> Cold Spring Harbor lab,
> NY 11724
> 516 367 8467
>
> Sent from my iPhone
>
> > On Feb 5, 2015, at 22:26, Marcela Karey Monaco <mkmonaco.cshl at gmail.com>
> wrote:
> >
> >
> > Hi Dave,
> >
> > Not sure I understand. The url for orthologues of GRMZM2G089819 is the
> one from where you submitted this bug report:
> >
> >
> http://ensembl.gramene.org/Zea_mays/Gene/Compara_Ortholog?db=core;g=GRMZM2G089819
> >
> > which works...  So perhaps the problem is on MaizeGDB's link outs?
> Cc:ing MaizeGDB and hope together we can figure out the problem :)
> >
> > Marcela
> >
> >> On Feb 5, 2015, at 9:38 PM, "feedback at gramene.org" <
> feedback at gramene.org> wrote:
> >>
> >> URL         :
> http://ensembl.gramene.org/Zea_mays/Gene/Compara_Ortholog?db=core;g=GRMZM2G089819
> >>
> >> Subject     : Site Feedback: ortholog error
> >>
> >> Name        : Dave Jackson
> >>
> >> Email       : jacksond at cshl.edu
> >>
> >> Organization: CSHL
> >>
> >> Comments    :
> >>
> >> I get this error when using ortholog link from MaizeGDB
> >>
> >>
> >> Database Error
> >>
> >> .
> >>
> >> Could not connect to the core;g=GRMZM2G089819 database.
> >>
> >> This view requires a gene, transcript or protein identifier in the URL.
> For example:
> >>
> >>   http://ensembl.gramene.org/Zea_mays/Gene/Summary?g=GRMZM2G144081
> >>
> >> If you think this is an error, or you have any questions, please
> contact our HelpDesk team.
> >>
> >> .
> >> Gramene release 44 - Jan 2015 © EBI
> >>
> >> http://www.warelab.org/bugs/view.php?id=5115
> >>
> >>
> >> _______________________________________________
> >> Feedback mailing list
> >> Feedback at gramene.org
> >> http://brie4.cshl.edu/mailman/listinfo/feedback
>
> _______________________________________________
> mgdb mailing list
> mgdb at iastate.edu
> https://mailman.iastate.edu/mailman/listinfo/mgdb
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://brie4.cshl.edu/pipermail/feedback/attachments/20150206/55bfde14/attachment.html>