[Feedback] Site Feedback: Ortholog alignments not working

[feedback at gramene.org]

URL         : http://oge.gramene.org/Oryza_sativa/Gene/Compara_Ortholog?db=core;g=OSJAP06G12020;g1=AT3G02380;r=6:9312473-9362472;seq=cDNA;t=OSJAP06G12020.1

Subject     : Site Feedback: Ortholog alignments not working

Name        : Josh Stein

Email       : steinj at cshl.edu

Organization: CSHL

Comments    : 

>From ortholog table, under compara trees, there are options to:
1) display an individual alignment of either cDNA or protein in pairwise fashion between the gene of interest and its listed ortholog.  There is no error message but the alignment does not load.
2) Above the table there is header menu with the left-most option to show alignments with all orthologs.  This should essentially do the same as above but load all pairwise alignments at once onto the same page.  This oddly sort of works but instead of loading alignments with orthologs it aligns alignments with paralogs.

To repeat this steps, load the gene page for OSJAP06G12020, then navigate to the ortholog lists and attempt to display alignments from that page.

http://www.warelab.org/bugs/view.php?id=5056