[Feedback] Site Feedback: query exception

[Marcela K. Monaco]

Dear Matthias,

There seems to be a problem with the Mart.  We will work to fix this ASAP.
Nonetheless, I would like to suggest that you use the live Gramene Mart at
http://ensembl.gramene.org/biomart/martview/  instead of the one from our
archives at http://archive.gramene.org/biomart/martview/
By the way, where did you get the link to the archived Mart?  We should
correct it to point to the live tool.  Thanks and very sorry for the
inconvenience,

Marcela


==
Marcela Karey Monaco, PhD
Gramene Project Coordinator
Cold Spring Harbor Laboratory
One Bungtown Road, Williams #5
Cold Spring Harbor, NY 11724
Phone: 516-367-8808
Fax: 516-367-6851


On Fri, Jun 27, 2014 at 8:29 AM, feedback at gramene.org <feedback at gramene.org>
wrote:

> URL         :
> http://archive.gramene.org/biomart/martview/90f7f7b7f826a9aa32743b93bdbbf7b2/90f7f7b7f826a9aa32743b93bdbbf7b2
>
> Subject     : Site Feedback: query exception
>
> Name        : Matthias Lange
>
> Email       : lange at ipk-gatersleben.de
>
> Organization: IPK Gatersleben, Germany
>
> Comments    :
>
> Serious Error: Could not connect to mysql database marker_mart_38: DBI
> connect('database=marker_mart_38;host=colden.cshl.edu;port=3306','gramene_web',...)
> failed: Unknown database 'marker_mart_38' at
> /usr/local/ensembl-live/biomart-perl/lib/BioMart/Configuration/DBLocation.pm
> line 98.
> ERROR: caught BioMart::Exception::Database: Could not connect to mysql
> database marker_mart_38: DBI connect('database=marker_mart_38;host=
> colden.cshl.edu;port=3306','gramene_web',...) failed: Unknown database
> 'marker_mart_38' at
> /usr/local/ensembl-live/biomart-perl/lib/BioMart/Configuration/DBLocation.pm
> line 98.
>
> If you repeatedly get directed to this error page, there may be a problem
> with your current session parameters. To clear your session and start with
> a clean slate, please click the New button below.
>
> Stacktrace:
> Exception::Class::Base::throw
> /usr/local/ensembl-live/biomart-perl/lib/BioMart/Configuration/DBLocation.pm:105
> BioMart::Configuration::DBLocation::openConnection
> /usr/local/ensembl-live/biomart-perl/lib/BioMart/DatasetI.pm:224
> BioMart::DatasetI::_getDBH
> /usr/local/ensembl-live/biomart-perl/lib/BioMart/Dataset/TableSet.pm:231
> BioMart::Dataset::TableSet::_fillAttributeTableWith
> /usr/local/ensembl-live/biomart-perl/lib/BioMart/Dataset/TableSet.pm:124
> BioMart::Dataset::TableSet::_getResultTable
> /usr/local/ensembl-live/biomart-perl/lib/BioMart/DatasetI.pm:1170
> BioMart::DatasetI::getResultTable
> /usr/local/ensembl-live/biomart-perl/lib/BioMart/QueryRunner.pm:472
> BioMart::QueryRunner::_processPath
> /usr/local/ensembl-live/biomart-perl/lib/BioMart/QueryRunner.pm:374
> BioMart::QueryRunner::_getResultTable
> /usr/local/ensembl-live/biomart-perl/lib/BioMart/QueryRunner.pm:194
> BioMart::QueryRunner::execute
> /usr/local/ensembl-live/biomart-perl/lib/BioMart/Web.pm:2454
> (eval) /usr/local/ensembl-live/biomart-perl/lib/BioMart/Web.pm:2206
> BioMart::Web::handle_request
> /usr/local/ensembl-live/biomart-perl/cgi-bin/martview:100
> (eval) /usr/local/ensembl-live/biomart-perl/cgi-bin/martview:99
> ModPerl::ROOT::ModPerl::Registry::usr_local_ensembl_2dlive_biomart_2dperl_cgi_2dbin_martview::handler
> /usr/local/lib/perl5/site_perl/5.14.2/x86_64-linux-thread-multi/ModPerl/RegistryCooker.pm:204
> (eval)
> /usr/local/lib/perl5/site_perl/5.14.2/x86_64-linux-thread-multi/ModPerl/RegistryCooker.pm:204
> ModPerl::RegistryCooker::run
> /usr/local/lib/perl5/site_perl/5.14.2/x86_64-linux-thread-multi/ModPerl/RegistryCooker.pm:170
> ModPerl::RegistryCooker::default_handler
> /usr/local/lib/perl5/site_perl/5.14.2/x86_64-linux-thread-multi/ModPerl/Registry.pm:31
> ModPerl::Registry::handler -e:0
> (eval) -e:0
>
> http://www.warelab.org/bugs/view.php?id=4980
>
>
> _______________________________________________
> Feedback mailing list
> Feedback at gramene.org
> http://brie4.cshl.edu/mailman/listinfo/feedback
>
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