[Feedback] Site Feedback: maize reference genome converters

[Marcela K. Monaco]

Sorry Owen, we do not.  Sequence data for V1 is only available in bulk at
ftp://ftp.gramene.org/pub/gramene/maizesequence.org/ and also a V1 genome
browser is available from maizeGDB at
http://gbrowse.maizegdb.org/gb2/gbrowse/maize_v1

Marcela

==
Marcela Karey Monaco, PhD
Gramene Project Coordinator
Cold Spring Harbor Laboratory
One Bungtown Road, Williams #5
Cold Spring Harbor, NY 11724
Phone: 516-367-8808
Fax: 516-367-6851


On Wed, Jul 23, 2014 at 2:15 PM, feedback at gramene.org <feedback at gramene.org>
wrote:

> URL         : http://ensembl.gramene.org/Zea_mays/Info/Index
>
> Subject     : Site Feedback: maize reference genome converters
>
> Name        : Owen Hoekenga
>
> Email       : hoekenga at cornell.edu
>
> Organization: Cornell U
>
> Comments    :
>
> Hi --
>
> I see that you have a tool that converts maize genome coordinates into the
> present v3 release. Do you have a legacy tool to convert v1 into v2? There
> are a number of GWAS studies that report AGP v1 coordinates and it would be
> great to mine those data in an efficient manner.
>
> cheers, Owen
>
> http://www.warelab.org/bugs/view.php?id=4994
>
>
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