[Feedback] Site Feedback: b42 problem: 'Genomic alignments (image)' doesn't work in b42, it works well in b41

feedback at gramene.org feedback at gramene.org
Wed Aug 20 11:56:11 EDT 2014


URL         : http://ayinger.cshl.edu/Arabidopsis_thaliana/Gene/Compara_Alignments/Image?align=8654

Subject     : Site Feedback: b42 problem: 'Genomic alignments (image)' doesn't work in b42, it works well in b41

Name        : Bo Wang

Email       : bwang at cshl.edu

Organization: CSHL

Comments    : 

If we go to 'Comparative genomics' in b42 of each genome, we will see this problem. Take Arabidopsis for example: http://ayinger.cshl.edu/Arabidopsis_thaliana/Gene/Compara_Alignments/Image?align=8654&db=core&g=AT3G52430&r=3%3A19431371-19434403&t=AT3G52430.1 
It shows following error: 
AJAX error - Runtime Error in component "EnsEMBL::Web::Component::Gene::Compara_AlignSliceBottom [content]"

Function EnsEMBL::Web::Component::Gene::Compara_AlignSliceBottom fails to execute due to the following error:

	Can't locate object method "get_slices" via package "EnsEMBL::Web::Object::Gene" at
	... /usr/local/ensembl-live/eg-web-common/modules/EnsEMBL/Web/Component/Gene/Compara_AlignSliceBottom.pm line
	... 73.
      

http://www.warelab.org/bugs/view.php?id=5008




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