[Feedback] Site Feedback: Reference of oryza_sativa.vcf

[feedback at gramene.org]

URL         : http://ensembl.gramene.org/Oryza_sativa/Info/Annotation

Subject     : Site Feedback: Reference of oryza_sativa.vcf

Name        : Mark

Email       : merfabreag at gmail.com

Organization: Chungnam National University

Comments    : 

Hi,

Just want to ask what reference version was used for the vcf file found at ftp://ftp.ensemblgenomes.org/pub/plants/release-21/vcf/oryza_sativa/oryza_sativa.vcf.gz. Was it the same reference NCBI dbSNP (v.129) used? Or was it the new reference versions (MSU7? Os-Nipponbare-Reference-IRGSP-1.0)? 

http://www.warelab.org/bugs/view.php?id=4928